T-COFFEE, Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=999
*
 BAD AVG GOOD
*
Cyperus_difform   : 100
Bromus_tectorum   : 100
Oryza_sativa      : 100
Alopecurus_myos   : 100
Apera_spica-ven   : 100
Lolium_multiflo   :  99
Zea_mays          :  99
Setaria_viridis   : 100
Echinochloa_cru   : 100
Echinochloa_phy   :  99
Raphanus_raphan   :  99
Descurainia_sop   :  99
Capsella_bursa-   :  99
Arabidopsis_tha   :  99
Camelina_microc   :  99
Camelina_sativa   : 100
Glycine_max       :  99
Galium_spurium    :  99
Euphorbia_heter   : 100
Ambrosia_trifid   :  99
Conyza_canadens   :  99
Bacopa_rotundif   : 100
Anthemis_cotula   : 100
Solanum_lycoper   :  99
Bassia_scoparia   :  99
Kochia_scoparia   :  99
Chenopodium_alb   :  99
Amaranthus_tube   :  99
Amaranthus_rudi   :  99
Amaranthus_grae   :  99
Amaranthus_thun   :  99
Amaranthus_spin   :  99
Amaranthus_viri   :  99
Amaranthus_hybr   :  99
Amaranthus_retr   :  99
Amaranthus_powe   :  99
Amaranthus_palm   :  99
Amaranthus_livi   :  99
Amaranthus_hypo   :  99
cons              :  99

Cyperus_difform   ---------------------------------------------------------------
Bromus_tectorum   ---------------------------------------------------------------
Oryza_sativa      ---MATTAAAA---------------------AAALSAAATAKTGRKNHQRHHVLPARGRVGA
Alopecurus_myos   ---MATATATSTAVAF------------SGAAAVALPKPTLPRYLPASRRALAARIRCSAVSP
Apera_spica-ven   --MATATSTAVAFSGA---------------AAVALPKPTLPRYLPASRRALTARIRCSAVSP
Lolium_multiflo   --MATATSTAVAFSGA--------------TATLPKPRTLPRHQLPSSRRALAAPIRCSAVSP
Zea_mays          --MATAAAASTALTGA--------------------------TTAAPKARRRAHLLATRRALA
Setaria_viridis   ---------------------------------------------------------------
Echinochloa_cru   ---------------------------------------------------------------
Echinochloa_phy   MATTAAATAATAAAAL--------------------------TGATTAAPRPSRRGYSAAAAR
Raphanus_raphan   ---------------------------------------------------------------
Descurainia_sop   -MAAATTSSSISFTTKPSHPSSSKSPLPISRFSLPF--SLNPHKSSSSRRRGIKSRALSCSAV
Capsella_bursa-   ------------------------------------------------------HTTNVSTTS
Arabidopsis_tha   MAAATTTTTTSSSISFSTKPSPSSSKSPLPISRFSLPFSLNPNKSSSSSRRRGIKSSSPSSIS
Camelina_microc   --MAAATTTSSSSIPFSTKHSSSKSPLPISRFTLPFSLNPNKSSSSSSRRRGIKSTALSISAV
Camelina_sativa   ---------------------------------------------------------------
Glycine_max       --MAATASRTTPFSSPSSSS--------HPTFPKRIARSTLPLSHQTFIKPNHALKIKCSISK
Galium_spurium    -MPYAAAAFKLSPATISKLPNPSNDSITALFSKATLSLPQIPRKSIHLSRRHCHRSAIISSLN
Euphorbia_heter   --------------------------------------------QSTTPRRSLQISNSTPKPT
Ambrosia_trifid   --MAAISPTNPSFT---TKP-PSSSATTPPPRSTFLPRFTFPITSTSPIRHRFHISNVLSDHK
Conyza_canadens   --MAAVTSPNPPFTTTTTKP-------PHSATTFHRPTTTHLSFPTPPKRNRFLHITNVLSDH
Bacopa_rotundif   MAAAAPTSASSIFSKQTSFS-SRTPKL-FSRFTVPFPHNSKKAIPSVSHRRPLQISNVISS--
Anthemis_cotula   ---------------------------------------------------------------
Solanum_lycoper   ---MAAASPSPCFSKT-LPPSSSKSSTLLPKSTFTFHNHPKKASPLHLTHTQHHSRFTVSNVI
Bassia_scoparia   ----ASTCANPTFTPFTSKP-LK---PRSPFHSFPFPSN--PKTPSSSFRN-LKITSSLSSSQ
Kochia_scoparia   ---MASTSANPTFTPFTSKP-LK---PRSPFHSFPFPSN--PKTPSSSFRN-LKITSSLSSSQ
Chenopodium_alb   ---MAATSSNPSFSPFPTLS-SKTPKPQSSIYSLPFPTN--PKTPSSFLRRPLQISA--SQSA
Amaranthus_tube   ----MASTSQPPFSSF-TKP-NKIPNLQSSIYALPFSNSLKPASSSSILRRPLQISSSSSQSP
Amaranthus_rudi   ---MASTSSNPPFSYF-TKP-YKIPNRQSYIYALPFSNSHKPT-SSSILRRALQISSSSSQSP
Amaranthus_grae   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYALPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_thun   ---MASNSSNPPFFYF-TIP-YKIPNLQSSIYAIPFSDSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_spin   ---MASSSSNPPLFYF-TKL-NKIPNRQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_viri   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_hybr   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_retr   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_powe   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_palm   ---MASTSTNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_livi   ---MASTSSNPPFSSF-TKP-NKIPNLQSSIYAIPFSNSLKPTSSSSILRRPLQISSSSSQSP
Amaranthus_hypo   ---MASNSSNPPFFYF-TKP-YKIPNLQSSIYAIPFSNSLKPTSSSSIPRRPLQISSSSSQSP

cons                                                                             


Cyperus_difform   -----------------------------------------DVLVEVLERQGVTDVFAYPGGA
Bromus_tectorum   ----------------------------LRPWGPSEPRKGADILVEALERCGIVDVFAYPGGA
Oryza_sativa      AAVRC--SAVSPVTPPS----PAPPATPLRPWGPAEPRKGADILVEALERCGVSDVFAYPGGA
Alopecurus_myos   SPAPP--ATA------------------LRPWGPSEPRKGADILVEALERCGVSDVFAYPGGA
Apera_spica-ven   SPAPP--ATA------------------LRPWGPSEPRKGADILVEALERCGIIDVFAYPGGA
Lolium_multiflo   SPSPAPPATA------------------LRPWGPSEPRKGADILVEALERCGISDVFAYPGGA
Zea_mays          APIRC--SAASPAMPMA------PPATPLRPWGPTEPRKGADILVXSLERCGVRDVFAYPGGA
Setaria_viridis   -----------------------------------------------------SDVFAYPGGA
Echinochloa_cru   -------------------------------------RKGADILVEALERRGVRDVFAYPGGA
Echinochloa_phy   RAAPI--RCSAASPATA----TAPPATPLRPWGPTEPRKGADILVEALERCGVRDVFAYPGGA
Raphanus_raphan   --------------------------TFVSRYAPDEPRKGADILVEALERQGVETVFAYPGGA
Descurainia_sop   QNTTT--NVSTTSSPAK----STGKKKFVSRFAPDQLRKGADILVEALERQGVETVFAYPGGA
Capsella_bursa-   PPKEP--TKT---------------EKFVSRFAPDQPRKGADILVEALERQGVETVFAYPGGA
Arabidopsis_tha   AVLNT--TTNVTTTPSP--TKPTKPETFISRFAPDQPRKGADILVEALERQGVETVFAYPGGA
Camelina_microc   LNTTT--NVSTTTPQSK--PTKPEKKKFVSRFAPDQPRKGADILVEALERQGVETAFAYPGGA
Camelina_sativa   ---------------------------------------------------------------
Glycine_max       PPSPP--ATTTTAAPAT-------SEPFVSRFASAEPRKGSDILVEALERLGVTNVFAYPGGA
Galium_spurium    SP-PA--AKTLAPTPET--------TPFVSRFAPDEPRKGCDVLVEALEREGVTDVFAYPGGA
Euphorbia_heter   IPAPS--VPSAPQTPPP-------------RFAPDEPRKGADILVEALERQGVTDVFAYPGGA
Ambrosia_trifid   P--------TITHSPSP-------TDPFISRYAPDQPRKGADVLVEALEREGVTDVFAYPGGA
Conyza_canadens   KPITT--TTTTTVPPPS----------FTSRFAADQPRKGSDVLVEALEREGVTDVFAYPGGA
Bacopa_rotundif   ----P--DTKIFQEESL-----------VSRFAPDEPRKGCDVLVEALEREGVTDVFAYPGGA
Anthemis_cotula   ---------------------------------------------EALEREGVTDVFAYPGGA
Solanum_lycoper   LSTTT--HDDVSE-----------PEIFVSRFAPDEPRKGCDVLVEALEREGVKDVFAYPGGA
Bassia_scoparia   PPKPP--SAVKTHSPPSPLTTDEPLQGFVSRFAPDQPRKGCDVLVEALEREGVTDVFAYPGGA
Kochia_scoparia   PPKPP--SAVKIHSPPSPLTTDEPPQGFVSRFAPDQPRKGCDVLVEALEREGVTDVFAYPGGA
Chenopodium_alb   NPKPP--SATQTAVPSP--LTEENPQSFVSRFAPDEPRKGCDVLVEALEREGVTNVFAYPGGA
Amaranthus_tube   KPKPP--SATITQSPSS--LTDDKPSSFVFRFSPDEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_rudi   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_grae   KPKPP--SATIIQSPS---LTDDKPSSFFSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_thun   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_spin   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_viri   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGSDVLVEALEREGVTDVFAYPGGA
Amaranthus_hybr   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_retr   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_powe   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_palm   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA
Amaranthus_livi   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGSDVLVEALEREGVTDVFAYPGGA
Amaranthus_hypo   KPKPP--SATITQSPSS--LTDDKPSSFVSRFSPEEPRKGCDVLVEALEREGVTDVFAYPGGA

cons                                                                             


Cyperus_difform   SMEIHQALTRSPVIDNHLLRHGQGESFAASGYARSTGKAGVCVATSGPGATNLVSALADALLD
Bromus_tectorum   SMEIHQALTRSPVITNHLFRHEQVEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLD
Oryza_sativa      SMEIHQALTRSPVITNHLFRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLD
Alopecurus_myos   SMEIHQALTRSPAITNHLFRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLD
Apera_spica-ven   SMEIHQALTRSPAITNHLFRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLD
Lolium_multiflo   SMEIHQALTRSPLITNHLFRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLD
Zea_mays          SMEIHQALTRSPVIANHLFRHEQGEAFAASGYARSSGRVGVCIATSGPGATNLVSALADALLD
Setaria_viridis   SMEIHQALTRSPVIANHLFPHEQGEAFAASGYARSSGRVGVCVATSGPGATNLVSALADALLD
Echinochloa_cru   SMEIHQALTRSPVIANHLLRHEQGEAFAASGFARSSGRVGVCVATSGPGATNLVSALADALLD
Echinochloa_phy   SMEIHQALTRSPVIANHLFRHEQGEAFAASGFARSSGRVGVCVATSGPGATNLVSALADALLD
Raphanus_raphan   SMEIHQALTRSSTIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLD
Descurainia_sop   SMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLD
Capsella_bursa-   SMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLD
Arabidopsis_tha   SMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLD
Camelina_microc   SMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSTGKPGICIATSGPGATNLVSGLADALLD
Camelina_sativa   ----YQALTRSSSIRNVLPRHEQGGVFAAEGYAGSTGKPGICIATSGPGATNLVSGLADALLD
Glycine_max       SMEIHQALTRSSTIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALMD
Galium_spurium    SMEIHQALTRSKTIRNVLPRHEQGGVFAAEGYARAAGVPGVCIATSGPGATNLVSGLADAMLD
Euphorbia_heter   SMEIHQALTRSPTIRNVLPRHEQGGVFAAEGYARASGKPGVCIATSGPGATNLVSGLADALLD
Ambrosia_trifid   SMEIHQALTRSKTIRNVLPRHEQGGVFAAEGYARASGLPGVCIATSGPGATNLVSGLADALLD
Conyza_canadens   SMEIHQALTRSTTIRNVLPRHEQGGIFAAEGYARASGLPGVCIATSGPGATNLVSGLADALLD
Bacopa_rotundif   SMEIHQALTRSKIIRNVLPRHEQGGVFAAEGYARASGVPGVCIATSGPGATNLVSGLADALLD
Anthemis_cotula   SMEIHQALTRSNVIRNVLPRHEQGGVFAAEGYARASGKPGVCIATSGPGATNLVSGLADALLD
Solanum_lycoper   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLD
Bassia_scoparia   SMEIHQALTRSDSIRNVLPRHEQGGIFAAEGYARATGRVGVCIATSGPGATNLVSGFADALLD
Kochia_scoparia   SMEIHQALTRSDSIRNVLPRHEQGGIFAAEGYARATGRVGVCIATSGPGATNLVSGFADALLD
Chenopodium_alb   SMEIHQALTRSGSIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_tube   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGFADALLD
Amaranthus_rudi   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGFADALLD
Amaranthus_grae   SMEIHQALTRSNIIRNVLPRHEQGGXFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_thun   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_spin   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_viri   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_hybr   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_retr   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_powe   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_palm   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_livi   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD
Amaranthus_hypo   SMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGRVGVCIATSGPGATNLVSGLADALLD

cons                  :******  * * *  * *   ***.*:* ::*  *:*:************.:***::*


Cyperus_difform   SVPMVAITGQVPRRMIGTEAFQETPIVEVTRSITKHNYLVLDVDDIPRIIKEAFFLATSGRPG
Bromus_tectorum   SIPMVAITGQVSRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPG
Oryza_sativa      SVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPG
Alopecurus_myos   SIPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPG
Apera_spica-ven   SIPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPG
Lolium_multiflo   SIPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPG
Zea_mays          SVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPG
Setaria_viridis   SVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVQEAFFLASSGRPG
Echinochloa_cru   SIPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDIDDIPRVVQEAFFLASSGRPG
Echinochloa_phy   SIPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDIDDIPRVIQEAFFLASSGRPG
Raphanus_raphan   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMXVDDIPRIVQEAFFLATSGRPG
Descurainia_sop   SVPLVAITGQVSRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIVEEAFFLATSGRPG
Capsella_bursa-   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIVQEAFFLATSGRPG
Arabidopsis_tha   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPG
Camelina_microc   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIVEEAFFLATSGRPG
Camelina_sativa   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIVEEAFFLATSGRPG
Glycine_max       SVPVVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLILDVDDIPRIVAEAFFVATSGRPG
Galium_spurium    SVPLVAITGQVPRKMIGTDAFQETPIVEVTRSITKHNYLVMNVEDIPRIVREAFFLAKSGRPG
Euphorbia_heter   SVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDIEDIPRIVSEAFFLASSGRPG
Ambrosia_trifid   SVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVREAFYLASSGRPG
Conyza_canadens   SVPVVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVREAFYLARSGRPG
Bacopa_rotundif   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFIARSGRPG
Anthemis_cotula   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVKEAFYLARTGRPG
Solanum_lycoper   SIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPG
Bassia_scoparia   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Kochia_scoparia   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Chenopodium_alb   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVVKEAFLLANSGRPG
Amaranthus_tube   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_rudi   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_grae   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_thun   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_spin   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_viri   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_hybr   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_retr   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_powe   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_palm   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_livi   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG
Amaranthus_hypo   SVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVKEAFFLANSGRPG

cons              *:*:*******.*:****:********************:: ::****:: *** :* :****


Cyperus_difform   PVLVDIPKDIQQQLAVPVWDTPMRLPGYTSRLPKQ----PEDNQLDQIIRLVSESKRPVLYVG
Bromus_tectorum   PVLVDIPKDIQQQMAVPAWDTPMSLPGYIARLPKP----PSTESLEQVLRLVGEAKRPILYVG
Oryza_sativa      PVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKP----PATELLEQVLRLVGESRRPILYVG
Alopecurus_myos   PVLVDIPKDIQQQMAVPVWDAPMSLPGYIARLPKP----PATELLEQVLRLVGESRRPILYVG
Apera_spica-ven   PVLVDIPKDIQQQMAVPVWDAPMSLPGYIARLPKP----PATELLEQVLRLVGEARRPILYVG
Lolium_multiflo   PVLVDIPKDIQQQMAVPVWDAPMSLPGYIARLPKP----PATELLEQVLRLVGEARRPILYVG
Zea_mays          PVLVDIPKDIQQQMAVPVWDKPMSLPGYIARLPKP----PATELLEQVLRLVGESRRPVLYVG
Setaria_viridis   PVLVDIPKDIQQQMAVPVWDTHMCLPGYIARLPKP----PATELLEQVLRLVGESRRPVLYVG
Echinochloa_cru   PVLVDIPKDIQQQMAVPVWNTPMSLPGYIARLPKP----PATELLEQVLRLVGESRRPVLYVG
Echinochloa_phy   PVLVDIPKDIQQQMAVPVWNTPMSLPGYIARLPKH----PATELLEQVLRLVGESRRPVLYVG
Raphanus_raphan   PVLVDVPKDIQQQLAIPNWDQPMRLPGYMSRLPQP----PEVSQLRQIVRLISESKRPVLYVG
Descurainia_sop   PVLVDVPKDIQQQLAVPNWDQPMRLPGYLSRMPKP----PEDSHLEQIVRLISESKKPVLYVG
Capsella_bursa-   PVLIDIPKDIQQQLAIPNWEQAMRLPGYMSRMPKP----PEESHLEQIVRLISEAKKPVLYVG
Arabidopsis_tha   PVLVDVPKDIQQQLAIPNWEQAMRLPGYMSRMPKP----PEDSHLEQIVRLISESKKPVLYVG
Camelina_microc   PVLVDVPKDIQQQLAIPNWEQSMRLPGYMSRMPKP----PEDSHLEQIVRLISESKKPVLYVG
Camelina_sativa   PVLVDVPKDIQQQLAIPNWEQSMRLPGYMSRMPKP----PEDSHLEQIVRLISESKKPVLYVG
Glycine_max       PVLIDIPKDVQQQLAVPNWDEPINLPGYLARLPRP----PTEAQLEHIVRLITEAQKPVLYVG
Galium_spurium    PVLIDVPKDIQQQMVVPDWDEPMRLSGYISRLPKS----PNEMYLDQILRLISESKRPVLYAG
Euphorbia_heter   PVLIDVPKDIQQQLAVPNWNVSMKLPGYLSRLPKD----PSELQLEQIVRLISESKKPVLYVG
Ambrosia_trifid   PVLIDVPKDIQQQLVVPKWDEPMRLPGYLSRLPKT----ENNGQLEQIVRLVSEAKRPVLYVG
Conyza_canadens   PVLIDIPKDIQQQLCVPKWDEPMRLPGYLSRLPKP----PNDGLLEQIVRLVGESKRPVLYVG
Bacopa_rotundif   PVLIDVPKDIQQQMVVPNWDQPMRLGGYLSRLPKP----PSEMLLEQVVRLISESKKPVLYVG
Anthemis_cotula   PVLIDVPKDIQQQLVVPKWDEAMRLPGYLARMPKA----PNVDHLYQIVRLVSEAKKPVLYAG
Solanum_lycoper   PVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRLPKL----PNEMLLEQIVRLISESKKPVLYVG
Bassia_scoparia   PVLIDIPKDIQQQLVVPDWGQGVRLGGYVSRLPKSVFSANDEGLLEQIVRLMSEAKKPVLYVG
Kochia_scoparia   PVLIDIPKDIQQQLVVPDWGQGVRLGGYVSRLPKSEFSANDEGLLEQIVRLMSEAKKPVLYVG
Chenopodium_alb   PVLIDIPKDIQQQLVVPNWDQPIKLGGYVSRLPKSKFSANEEGLLEQIVRLMSEAKKPVLYVG
Amaranthus_tube   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTFSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_rudi   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTFSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_grae   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGEAKRPVLYTG
Amaranthus_thun   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEG-LDQIVRLVGESKRPVLYTG
Amaranthus_spin   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_viri   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_hybr   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_retr   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_powe   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_palm   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_livi   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG
Amaranthus_hypo   PVLIDIPKDIQQQLVVPNWEQPIKLGGYLSRLPKPTYSANEEGLLDQIVRLVGESKRPVLYTG

cons              ***:*:***:***: :* *   : * ** :*:*:          * :::**: *:::*:**.*


Cyperus_difform   GGCANSGAELKRFVELTGIPVTTTLMGLGNFPCDE-PLCLRLLGMHGTVYANYAVDKADLLLA
Bromus_tectorum   GGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Oryza_sativa      GGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Alopecurus_myos   GGCSASGEELRRFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDRADLLLA
Apera_spica-ven   GGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Lolium_multiflo   GGCSASGEELRRFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Zea_mays          GGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Setaria_viridis   GGCAASGEELRRFVEMTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Echinochloa_cru   GGCAASGEELRRFVEMTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Echinochloa_phy   GGCAASGEELRRFVEMTGIPVTTTLMGLGNFPSDD-PLSLRMLGMHGTVYANYAVDKADLLLA
Raphanus_raphan   GGSLNSSEELGRFVELTGIPVASTLMGLGSYPCND-ELSLQMLGMHGTVYANYAVEHSDLLLA
Descurainia_sop   GGCLNSSDELRRFVELTGIPDASTLMGLGSYPCDD-ELSLHMLGMHGTVYANYSVEHSDLLLA
Capsella_bursa-   GGCLNSSDELVRFVELTGIPVASTLMGLGSYPCDA-ELSLHMLGMHGTVYANYSVEHSDLLLA
Arabidopsis_tha   GGCLNSSDELGRFVELTGIPVASTLMGLGSYPCDD-ELSLHMLGMHGTVYANYAVEHSDLLLA
Camelina_microc   GGCLNSSEELGRFVELTGIPVASTLMGLGAYPCDD-ELSLHMLGMHGTVYANYSVEHSDLLLA
Camelina_sativa   GGCLNSSEELGRFVELTGIPVASTLMGLGAYPCDD-ELSLHMLGMHGTVYANYSVEHSDLLLA
Glycine_max       GGSLNSSDELRRFVELTGIPVASTLMGLGTYPIGD-EYSLQMLGMHGTVYANYAVDNSDLLLA
Galium_spurium    GGCLNSGKELTRFVELTGIPVASTLMGLGAHPCSDEEHSLQMLGMHGTVYANYAVDKSDLLLA
Euphorbia_heter   GGCLNSSEELRKFVELTGIPVASTLMGLGSFPLNH-DLSLSMLGMHGTVYANYAVDKSDLLLA
Ambrosia_trifid   GGCLNSADELRRFVELTGIPVASTLMGLGAYPASS-DLSLHMLGMHGTVYANYAVDKSDLLLA
Conyza_canadens   GGCLNSSDELRRFVELTGIPVASTLMGLGSYPASS-DLSLQMLGMHGTVYANYAVDKADLLLA
Bacopa_rotundif   GGCLNSSEELRKFVELTGIPVASTLMGLGSYPGSDEELALQMLGMHGTVYANYAVDKSDLLLA
Anthemis_cotula   GGCLDASEELRRFVELTGIPVTNTLMGLGTFPASD-DLSLRMLGMHGTVYANYAVDKSDLLLA
Solanum_lycoper   GGCSQSSEELRRFVELTGIPVASTLMGLGAFPSGD-ELSLQMLGMHGTVYANYAVDSSDLLLA
Bassia_scoparia   GGCLNSGEELRKFVELTGIPVASTLMGLGAYPCND-DLSLHMLGMHGTVYANYAVDKADLLLA
Kochia_scoparia   GGCLNSGEELRKFVELTGIPVASTLMGLGAYPCND-DLSLHMLGMHGTVYANYAVDKADLLLA
Chenopodium_alb   GGCLNSSEELRKFVELTGIPVASTLMGLGAYPCND-ELSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_tube   GGCLNSSEELRKFVKLTGIPVASTLMGLGAFPCTD-DLSLQMLGMHGTVYANYAVDKADLLLA
Amaranthus_rudi   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLQMLGMHGTVYANYAVDKADLLLA
Amaranthus_grae   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_thun   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLCLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_spin   GGCLNSSEELRKFVKLTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_viri   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLCLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_hybr   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_retr   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_powe   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_palm   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_livi   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA
Amaranthus_hypo   GGCLNSSEELRKFVELTGIPVASTLMGLGAFPCTD-DLSLHMLGMHGTVYANYAVDKADLLLA

cons              **.  :. **  **::**** :.****** .*      .* :***********:*: :*****


Cyperus_difform   FGVRFDDRVTGKLEAFASRSKIVHIDIDPAEIGKNKQPHVSICADVKPALQGMNQILESS--G
Bromus_tectorum   FGVRFDDRVTGKIEAFASRSKIVHIDIDPAEIGKNKQPHVSICADVKLALQGLNDLLNGS--K
Oryza_sativa      FGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGLNALLQQS--T
Alopecurus_myos   FGVRFDDRVTGKIEAFASRSKIVHIDIDPAEIGKNKQPHVSICADVKIALQGLNTLLLNES-K
Apera_spica-ven   FGVRFDDRVTGKIEAFASRSKIVHIDIDPAEIGKNKQPHVSICADVKIALQGLNTLLQNGS-K
Lolium_multiflo   FGVRFDDRVTGKIEAFASRSKIVHIDIDPAEIGKNKQPHVSICADVKLALQGLNALLTGS--K
Zea_mays          LGVRFDDRVTGKIEAFASRAKIVHVDIDPAEIGKNKQPHVSICADVKLALQGMNALLEGS--T
Setaria_viridis   FGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGMNTLLEGI--T
Echinochloa_cru   FGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGMNALLEGI--I
Echinochloa_phy   FGVRFDDRVTGKIEAFASRAKIVHIDIDPAEIGKNKQPHVSICADVKLALQGMNALLEGI--I
Raphanus_raphan   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKILENR--A
Descurainia_sop   FGVRFDDLVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLEKR--V
Capsella_bursa-   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR--A
Arabidopsis_tha   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR--A
Camelina_microc   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR--A
Camelina_sativa   FGVRFDDRVTGKLEVFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLENR--A
Glycine_max       FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQAHVSVCADLKLALQGINMILEKKR-V
Galium_spurium    FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIGLALQKMNSMLETR--K
Euphorbia_heter   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKLALQGVNKILESK--S
Ambrosia_trifid   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDIKVALQGLNEILEEK--N
Conyza_canadens   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDIKIALQGLNKILEGR--R
Bacopa_rotundif   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALEGLNTILEEKAGS
Anthemis_cotula   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDIKIALQGLNKILEKG--E
Solanum_lycoper   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSIFESK--K
Bassia_scoparia   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADVKYALKGMNKILESR--K
Kochia_scoparia   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADVKYALKGMNKILESR--K
Chenopodium_alb   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADVKLALKGMNKILESR--K
Amaranthus_tube   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALRGLNNILESR--K
Amaranthus_rudi   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDIKVALXGLNNILESR--K
Amaranthus_grae   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_thun   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_spin   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_viri   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_hybr   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_retr   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_powe   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_palm   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_livi   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K
Amaranthus_hypo   FGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICGDVKVALQGLNKILESR--K

cons              :****** ****:*.****:****:***.******* .***:*.*:  **  :* ::      


Cyperus_difform   VHKKLDFSSWRAELDEQKKTYPLSYKTFGEEIPPQYAIQVLDELTNGEAIISTGVGQHQMWAA
Bromus_tectorum   AQKSLDFGPWQEELEQQKRTFPLGYKTFGEAIPPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Oryza_sativa      TKTSSDFSAWHNELDQQKREFPLGYKTFGEEIPPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Alopecurus_myos   TRKCSDFSSWHEELDQQKREFPLGYKTFGEAIPPQYAIKVLDELTNGDAIIATGVGQHQMWAA
Apera_spica-ven   TRKASDFSSWHEELDQQKREFPLGYKTFGEAIPPQYAIKVLDELTNGEAIIATGVGQHQMWAA
Lolium_multiflo   AHKSFDFASWHDELEQQKREFPLGYKTFGEAIPPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Zea_mays          SKKSFDFGSWNDELDQQKREFPLGYKTSNEEIQPQYAIQVLDELTKGEAIIGTGVGQHQMWAA
Setaria_viridis   SKKSFDFGSWHDELDQQKRGFPLGYKTFDEEIQPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Echinochloa_cru   SKKSFDFGSWQDELDQQKREFPLGYKTFDEEIQPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Echinochloa_phy   SKKSFDFGSWQDELDQQKREFPLGYKTFDEEIQPQYAIQVLDELTKGEAIIATGVGQHQMWAA
Raphanus_raphan   EELKLDFGVWRSELSEQKQKFPLSFKTFGEAIPPQYAIQVLDELTDGKAIISTGVGXHQMWAA
Descurainia_sop   EELKLDFGVWRNELNEQKQKFPLSFKTFGEAIPPQYAIQVLDELTDGKAIISTGVGQHQMWAA
Capsella_bursa-   EELKLDFGVWRNELNGQKQKFPLSFKTFGEAIPPQYAIQVLDELTDGKAIISTGVGQHQMWAA
Arabidopsis_tha   EELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAA
Camelina_microc   EELKLDFGVWRSELNEQKQKFPLSFKTFGEAIPPQYAIQVLDELTDGRAIISTGVGQHQMWAA
Camelina_sativa   EERKLDFGVWRSELNEQKQKFPLSFKTFGEAIPPQYAIQVLDELTDGKAIISTGVGQHQMWAA
Glycine_max       GGGKLDLGGWREEINVQKHKFPLGYKTFQDAISPQHAIEVLDELTNGDAIVSTGVGQHQMWAA
Galium_spurium    SKLNLDFSAWREELKEVKVKYPLSFKTFGNAIPPQYAIQTLDELTGGNAIISTGVGQHQMWAA
Euphorbia_heter   FKSKLDFGKWRDELNDQKVKYPLNFKTFDEAIPPQYAIQVLDELTDGNAIISTGVGQHQMWSA
Ambrosia_trifid   SVTNLDFSNWRKELDEQKVKFPLSFKTFGEAIPPQYAIQVLDELTGGNAIISTGVGQHQMWAA
Conyza_canadens   EMSNLDFSAWRAELDEQKVNHPLSFKTFGEAIPPQYAIQVLDELTGGNAIISTGVGQHQMWAA
Bacopa_rotundif   GKVIPDFAAWRQELKEQKAKYPLTFKTFEDAIPPQHAIQVLDELTCGKAIISTGVGQHQMWAA
Anthemis_cotula   GK-GFDFSSWRSELDEQKVKFPLSFKTFGEAIPPQYAIQVLDELTGGEAIISTGVGQHQMWAA
Solanum_lycoper   GKLKLDFSAWRQELTEQKVKYPLNFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAA
Bassia_scoparia   GKLNLNYSSWREELGEQKKKFPLSFKTFGEAIPPQYAIQMLDELTNGNAIISTGVGQHQMWAA
Kochia_scoparia   GKLNLNYSSWREELGEQKKKFPLSFKTFGEAIPPQYAIQMLDELTNGNAIISTGVGQHQMWAA
Chenopodium_alb   GKLNLDYSSWREELGEQKKKFPLSFKTFGEAIPPQYAIQMLDELTDGNAVISTGVGQHQMWAA
Amaranthus_tube   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAIVSTGVGQHQMWAA
Amaranthus_rudi   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAIVSTGVGQHQMWAA
Amaranthus_grae   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_thun   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_spin   GKVKLDFSNWREELNEQKEKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_viri   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_hybr   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_retr   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_powe   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_palm   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_livi   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA
Amaranthus_hypo   GKVKLDFSNWREELNEQKKKFPLSFKTFGDAIPPQYAIQVLDELTKGDAVVSTGVGQHQMWAA

cons                   : . *. *:   *  .** :**  : * **:**: ***** * *::.**** ****:*


Cyperus_difform   QYYNYKRPRQWLSSSGLGAMGFGLPAAAGAAVGNPGVTVVDINGDGSFLMNIQELAMIKVENL
Bromus_tectorum   QYYSYKRPRQWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENL
Oryza_sativa      QYYTYKRPRQWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNIQELALIRIENL
Alopecurus_myos   QYYTYKRPRQWLSSSGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELALIRIENL
Apera_spica-ven   QYYTYKRPRQWLSSSGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELALIRIENL
Lolium_multiflo   QYYTYKRPRQWLSSAGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELALIRIENL
Zea_mays          QYYTYKRPRQWLSSAGLGAMGFGLPAAAGASVANPGVTVVDIDGDGSFLMNVQELAMIRIENL
Setaria_viridis   QYYTYKRPRQWLSSAGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFQMNIQELAMIRIENL
Echinochloa_cru   QYYTYKRPRQWLSSAGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELAMIRIENL
Echinochloa_phy   QYYTYKRPRQWLSSAGLGAMGFGLPAAAGAAVANPGVTVVDIDGDGSFLMNIQELAMIRIENL
Raphanus_raphan   QFYKYRKPRQWLSSSGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENL
Descurainia_sop   QFYKYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMKVQELATIRVENL
Capsella_bursa-   QFYKYKKPRQWLTSAGLGAMGFGLPAAIGASVANPHAIVIDIDGDGSFMMNLQELATIRVENL
Arabidopsis_tha   QFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENL
Camelina_microc   QFYKYKKPRQWLSSAGLGAMGFGLPAAIGASVANPDSIVVDIDGDGSFIMNVQELATIRVENL
Camelina_sativa   QFYKYKKPRQWLSSAGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENL
Glycine_max       QFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFIMNVQELATIRVENL
Galium_spurium    QFYKYNRPRQWLTSGGLGAMGFGLPAAMGAAVARPDCVVVDIDGDGSFMMNVQELATIRVENL
Euphorbia_heter   QFYKYKKPRQWLTSGGLGAMGFGLPAAIGASVANPNAVVVDIDGDGSFIMNVQELATIRVENL
Ambrosia_trifid   QFYKYNRPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Conyza_canadens   QFYKYNRPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Bacopa_rotundif   QFYKYNRPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Anthemis_cotula   QFYKYNRPRQWLTSGGLGAMGFGLPAAMGAAVARPDAVVVDIDGDGSFMMNVQELATIRVENL
Solanum_lycoper   QHYKYKKPRQWLTSGGLGAMGFGLPAAIGAAVGRPGEIVVDIDGDGSFIMNVQELATIKVENL
Bassia_scoparia   QHYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Kochia_scoparia   QHYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Chenopodium_alb   QHYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPESVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_tube   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_rudi   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_grae   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_thun   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_spin   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_viri   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_hybr   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_retr   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_powe   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_palm   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_livi   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL
Amaranthus_hypo   QFYKYRNPRQWLTSGGLGAMGFGLPAAIGAAVARPDAVVVDIDGDGSFIMNVQELATIRVENL

cons              *.*.*..*****:*.************ **:*..*   *:**:***** *::**** *::***


Cyperus_difform   PVKTMVLNNQHLGMVVQWEDRFYKANRAHTYLGNPANEEQIYPDFVKIAEGFGVPAARVTRRS
Bromus_tectorum   PVKVMILNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNVPAVRVTKKS
Oryza_sativa      PVKVMVLNNQHLGMVVQLEDRFYKANRAHTYLGNPECESEIYPDFVTIAKGFNIPAVRVTKKS
Alopecurus_myos   PVKVMILNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNVPAVRVTKKS
Apera_spica-ven   PVKVMILNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNVPAVRVTKKS
Lolium_multiflo   PVKVMILNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNVPAVRVTKRS
Zea_mays          PVKVFVLNNQHLGMVVQLEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKN
Setaria_viridis   PVKVFVLNNQHLGMVVQWEDRFYKANRAHTFLGNPDNESEIYPDFVTIAKGFNIPAARVTKKS
Echinochloa_cru   PVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKS
Echinochloa_phy   PVKVFVLNNQHLGMVVQWEDRFYKANRAHTYLGNPENESEIYPDFVTIAKGFNIPAVRVTKKS
Raphanus_raphan   PVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPARESEIFPNMLQFAGACGIPAARVTKKE
Descurainia_sop   PVKILLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQENEIFPNMLLFAAACGIPAARVTKKE
Capsella_bursa-   PVKILLLNNQHLGMVMQWEDRFYKANRAHTYLGNPAEEDKIFPNMLEFASACGIPAARVTKKE
Arabidopsis_tha   PVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKA
Camelina_microc   PVKILILNNQHLGMVMQLEDRFYKANRAHTYLGNPAEEDEIFPNMLQFASACGIPAARVTKIA
Camelina_sativa   PVKILILNNQHLGMVMQWEDRLYKANRAHTYLGNPAAEDEIFPNMLQFASACGIPAARVTKKA
Glycine_max       PVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSSENEIFPNMLKFADACGIPAARVTKKE
Galium_spurium    PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPEKESEIFPDMLKFAEACDIPAARVTHVD
Euphorbia_heter   PIKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSKESEIFPNMLKFAEACGIPAARVSRKQ
Ambrosia_trifid   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSKESEIFPNMLKFAEACDIPAARVTRKA
Conyza_canadens   PVKVLLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSKEAEIFPNMLKFAEACDIPAARVTRKA
Bacopa_rotundif   PIKIMLLNNQHLGMVVQWEDRFYKSNRAHTYLGNPSKESEIFPDMLKFAEACDIPAARVTKIA
Anthemis_cotula   PVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGNPMKESEIFPNMLKFAEACDIPAARVTKKA
Solanum_lycoper   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPANEEEIFPNMLKFAEACGVPAARVSHRD
Bassia_scoparia   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSKESEIFPDMLKFAEACDIPAARVTKVG
Kochia_scoparia   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSKESEIFPDMLKFAEACDIPAARVTKVG
Chenopodium_alb   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSKESEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_tube   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_rudi   PVKIMLLNNQHLGMVVQLEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_grae   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_thun   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_spin   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_viri   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_hybr   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_retr   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_powe   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_palm   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_livi   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS
Amaranthus_hypo   PVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPSNSSEIFPDMLKFAEACDIPAARVTKVS

cons              *:* ::*********:* ***:**:*****:**:*  . :*:*::: :* . .:**.**::  


Cyperus_difform   EVREAVRIMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDMITDGDGRTL--
Bromus_tectorum   EVRAAIQKMLDTPGPYLLDIIVPHQEHVLPMIPSGGAFKDIIMEGDGRIEY-
Oryza_sativa      EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPIGGAFKDMILDGDGRTVY-
Alopecurus_myos   EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDIIMEGDGRISY-
Apera_spica-ven   EVPAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDIIMDGDGRISY-
Lolium_multiflo   EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDIIMEGDGRIAY-
Zea_mays          EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY-
Setaria_viridis   EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTGLL
Echinochloa_cru   EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY-
Echinochloa_phy   EVRAAIKKMLETPGPYLLDIIVPHQEHVLPMIPSGGAFKDMILDGDGRTVY-
Raphanus_raphan   ELREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFKDVITEGDGRTKY-
Descurainia_sop   HLRDAIQKMLDTPGPYLLDVICPHQEHVLPMIPSGGTFSDVITEGDGRTKY-
Capsella_bursa-   QLREAIQKMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRTKY-
Arabidopsis_tha   DLREAIQTMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRIKY-
Camelina_microc   ELREAIQKMLDTPGPYLLDVICPHQEHVLPMIPSGGTFNDVITEGDGRTKY-
Camelina_sativa   ELREAIQKMLDTPGPYLLDVICPHQEHVLPMIPSG-----------------
Glycine_max       ELRAEIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY-
Galium_spurium    DLRGAIQKMLDTPGPYLLDVIVPHQEHVLPMIPNGGAFKD------------
Euphorbia_heter   DIRGAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGGFKDIITEGDGRFKY-
Ambrosia_trifid   DLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPAGGGFMDVITEGDGRTKY-
Conyza_canadens   DLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPAGGGFMDVITEGDGRTKY-
Bacopa_rotundif   DLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRIKY-
Anthemis_cotula   DLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPAGGGFMDVITEGDGRTQY-
Solanum_lycoper   DLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRRSY-
Bassia_scoparia   DLRAAMQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDIINEGDGRTSY-
Kochia_scoparia   DLRAAMQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDIINEGDGRTSY-
Chenopodium_alb   ELRAAMQKMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDIINEGDGRTSY-
Amaranthus_tube   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_rudi   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_grae   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_thun   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_spin   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_viri   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_hybr   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_retr   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_powe   DLRTAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_palm   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_livi   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-
Amaranthus_hypo   DLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGAAFKDTITEGDGRRAY-

cons              .:   :: **:********:* *********** .